RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miR1882c_Both

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr7

Start:

9122417

End:

9122440

Strand:

+

Sequence:

AGAUUGCUUUCAAGGUCAUUUCUU

Length:

24

precursor sequence:

GUUAUCAUUACCAAUAUCCUAGAUUGCUUUCAAGGUCAUUUCUUUAGGGAACCCCAUUCCCAUAAAUUCAGUAUCCAAAGCUGGUUGUUGUAUCUAUGGGAAAGGGUUCCCUAACGAAAUGAUCUUGGACGCAAUCUAGGAGUUUGCUGACGAUAACGU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

178

NEP:

64.96%

LE_num:

17

LEP:

6.2%

ME_num:

52

MEP:

18.98%

HE_num:

27

HEP:

9.85%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.89

Avg Expression:

39.99

Tip: Osa-miR1882c_Both is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: Osa-miR1882c_Both is not a differential expression ncRNA.