Chr:
Chr9
Start:
16555519
End:
16555542
Strand:
+
Sequence:
ACUUAAUCUGGACACUAUAAAAGA
Length:
24
precursor sequence:
ACCACUGCAGACUUAAUCUGGACACUAUAAAAGAAAAUUGUGCAUGUGAAAAUAUGCCCAUUAUAAAUUUGUAGUGUUCAGAUUGAGUUUAGAAUGGUUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
9
NEP:
3.28%
LE_num:
LEP:
2.19%
ME_num:
MEP:
67.15%
HE_num:
HEP:
27.37%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf_sheath
Tau :
0.71
Avg Expression:
23.22
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | 2.20770616613133 | 8.30633307775552e-06 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | 2.07877958677531 | 3.63601858063569e-05 |
| 3 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | -1.57828946059603 | 0.0455423291598655 |
| 4 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | -1.52492354523053 | 0.000365665067334873 |
| 5 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | -1.36966985155028 | 0.000322234200072765 |
| 6 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_eaR_bphly | -1.22434254529646 | 0.0165493858059681 |
| 7 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -2.01353872489102 | 0.000109344629699765 |
| 8 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -1.71423594392069 | 0.00756932402052441 |