Chr:
Chr3
Start:
35782501
End:
35782521
Strand:
+
Sequence:
UGGCAAGUCUCCUCGGCUACC
Length:
21
precursor sequence:
AGGCCAUCUUCGAUAGCCAAGGAUGAUUUGCCUGUAGCCCCAUUGUCAUCAGCUCUCUCCGUCGAGAGCGACAACCGGGCUCUACUGGCAAGUCUCCUCGGCUACCCGAGUACCUCUUAUGCUAUCCCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
75
NEP:
27.37%
LE_num:
LEP:
16.79%
ME_num:
MEP:
54.74%
HE_num:
HEP:
1.09%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.81
Avg Expression:
4.41
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -4.13645033070947 | 0.0331370671036066 |
| 2 | glyphosate-tolerant variety // leaves // CK--/--glyphosate-tolerant variety // leaves // Glyphosate | -3.89847891437256 | 1.05130311499517e-11 |
| 3 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_24h | 1.24505839416285 | 0.0382563823952174 |