Chr:
Chr12
Start:
16586629
End:
16586650
Strand:
-
Sequence:
CGAUCUUGUGGCAGGAGCUGAG
Length:
22
precursor sequence:
GCGUGUUGUAUAUUCUUAGGCCCGAUCUUGUGGCAGGAGCUGAGUAGCUGGUGAACUCGCUUUAUGUUGUUCAUUCACUCGCUACACGGUUCCUGUCCCAAGAUCGAGUCUGUGAAUAUGCAAAUGUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
189
NEP:
68.98%
LE_num:
LEP:
13.14%
ME_num:
MEP:
16.79%
HE_num:
HEP:
1.09%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_base
Tau :
0.98
Avg Expression:
17.74
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf_sheath // S_bph feeding--/--BPH6-transgenic line // leaf_sheath // R_bph | -3.18377449759113 | 2.19876007073858e-07 |
| 2 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | -3.22288323950461 | 5.84662884969478e-05 |
| 3 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | -3.3436186049967 | 3.8286374186971e-05 |
| 4 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | 2.88448543846027 | 2.06597673497723e-05 |