Chr:
Chr11
Start:
2523291
End:
2523314
Strand:
+
Sequence:
CUAGAUUUGUUUAUUUUGGGACGG
Length:
24
precursor sequence:
UACUAGUGUGUAUUUCCUUCAUCCCAAAAUGAAAAAAUCUAGUACAUUAUGUGUUUGACAUAUCCUGUACUAGAUUUGUUUAUUUUGGGACGGAGGGAGUAUCCAGUAGUAGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
3
NEP:
1.09%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
31.02%
HE_num:
HEP:
67.88%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seed
Tau :
0.79
Avg Expression:
261.76
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | 1.05401809813731 | 5.47504392201713e-09 |
| 2 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | -1.29508854633963 | 8.98474997047751e-10 |
| 3 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_eaR_bphly | -1.28458001876287 | 0.00514380918407276 |
| 4 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -1.30759483338313 | 0.0399956317997153 |
| 5 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -2.00605813812523 | 0.0044401643511203 |