Chr:
Chr2
Start:
16227884
End:
16227903
Strand:
+
Sequence:
CUGUACCCUCUCUCUUCUUC
Length:
20
precursor sequence:
GAAGAAGAGAGAGAGUACAGCCUUAGUUCAGAUCACAUAUGACUAUCUUUUGCGAGUCUGAUCGAUACUCUGAUGAAGGCUGUACCCUCUCUCUUCUUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
77
NEP:
28.1%
LE_num:
LEP:
4.38%
ME_num:
MEP:
39.05%
HE_num:
HEP:
28.47%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
ovary
Tau :
0.88
Avg Expression:
69.20
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(2) | -1.81001553100087 | 0.000965215153678073 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | 5.09522901530598 | 0.00711697374497493 |
| 3 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | -1.47104200172021 | 0.000756938721921401 |
| 4 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | -3.36802282032378 | 1.48913520826223e-06 |
| 5 | Nipponbare // leaf_sheath // S_bph feeding--/--BPH6-transgenic line // leaf_sheath // R_bph | -1.42788417911959 | 2.2252069150116e-14 |
| 6 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | 1.52325228858695 | 2.31723791990621e-10 |
| 7 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_eaR_bphly | 1.50100758588491 | 8.61158720613245e-09 |