RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

Fliter by Chromosome:

Fliter by DE/TSE:

total numbers: 1299

rows per page

Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
Osa-miR156a	miRbase/PmiREN	/	Chr1	22524221	22524240	-	Y/Y
Osa-miR156b	miRbase/PmiREN	/	Chr1	4666383	4666402	+	Y/Y
osa-miR156b-3p	miRbase		Chr1	4666450	4666470	+	Y/Y
Osa-miR156c	miRbase/PmiREN	/	Chr1	4666003	4666022	+	Y/Y
osa-miR156c-3p	miRbase		Chr1	4666074	4666095	+	Y/Y
osa-miR156d	miRbase		Chr2	4512974	4512993	-	Y/Y
Osa-miR156e	miRbase/PmiREN	/	Chr4	25026402	25026421	-	Y/Y
osa-miR156f-5p	miRbase		Chr8	21478233	21478252	+	Y/Y
osa-miR156f-3p	miRbase		Chr8	21478393	21478414	+	Y/N
Osa-miR156g	miRbase/PmiREN	/	Chr9	15065256	15065275	+	Y/Y
osa-miR156g-3p	miRbase		Chr9	15065346	15065367	+	Y/Y
osa-miR156h-5p	miRbase		Chr8	21491235	21491254	+	Y/Y
osa-miR156h-3p	miRbase		Chr8	21491395	21491416	+	Y/N
Osa-miR156i	miRbase/PmiREN	/	Chr2	24120063	24120082	-	Y/Y
osa-miR156j-5p	miRbase		Chr6	26554836	26554855	+	Y/Y
osa-miR156j-3p	miRbase		Chr6	26554902	26554923	+	N/N
Osa-miR160a	miRbase/PmiREN	/	Chr2	3511649	3511669	-	Y/N
osa-miR160a-3p	miRbase		Chr2	3511586	3511606	-	Y/N
Osa-miR160b	miRbase/PmiREN	/	Chr6	28081049	28081069	+	Y/N
osa-miR160b-3p	miRbase		Chr6	28081112	28081132	+	Y/N
Osa-miR160c	miRbase/PmiREN	/	Chr8	1707574	1707594	+	Y/N
osa-miR160c-3p	miRbase		Chr8	1707642	1707662	+	Y/Y
Osa-miR160d	miRbase/PmiREN	/	Chr3	32454995	32455015	+	Y/N
osa-miR160d-3p	miRbase		Chr3	32455106	32455126	+	Y/N
Osa-miR162a	miRbase/PmiREN	/	Chr2	23605941	23605961	+	Y/N
Osa-miR164a	miRbase/PmiREN	/	Chr7	28523460	28523480	-	Y/N
Osa-miR164b	miRbase/PmiREN	/	Chr5	15896243	15896263	-	Y/N
osa-miR166a-5p	miRbase		Chr10	19987156	19987176	+	Y/Y
Osa-miR166a	miRbase/PmiREN	/	Chr10	19987244	19987264	+	Y/N
osa-miR166b-5p	miRbase		Chr6	30327248	30327268	-	Y/Y
Osa-miR166b	miRbase/PmiREN	/	Chr6	30327102	30327122	-	Y/N
osa-miR166c-5p	miRbase		Chr3	3487799	3487818	+	Y/Y
osa-miR166c-3p	miRbase		Chr3	3487878	3487898	+	Y/N
osa-miR166d-5p	miRbase		Chr2	26130079	26130099	+	Y/N
Osa-miR166d	miRbase/PmiREN	/	Chr2	26130149	26130169	+	Y/N
Osa-miR166e	miRbase/PmiREN	/	Chr3	765735	765755	+	Y/Y
osa-miR166e-3p	miRbase		Chr3	765831	765851	+	Y/N
Osa-miR166f	miRbase/PmiREN	/	Chr10	14483305	14483325	-	Y/N
Osa-miR167a	miRbase/PmiREN	/	Chr12	25476821	25476841	+	Y/N
osa-miR167a-3p	miRbase		Chr12	25476917	25476938	+	Y/N
Osa-miR167b	miRbase/PmiREN	/	Chr3	30547053	30547073	-	Y/N
Osa-miR167c	miRbase/PmiREN	/	Chr3	33130635	33130655	+	Y/N
osa-miR167c-3p	miRbase		Chr3	33130741	33130763	+	Y/Y
osa-miR169a	miRbase		Chr1	8729141	8729161	+	Y/Y
osa-miR171a	miRbase		Chr6	25891198	25891218	+	Y/N
Osa-miR393a	miRbase/PmiREN	/	Chr1	2309233	2309253	-	Y/Y
Osa-miR394	miRbase/PmiREN	/	Chr2	27148167	27148186	+	Y/N
osa-miR395b	miRbase		Chr4	31805344	31805364	-	Y/N
Osa-miR395d	miRbase/PmiREN	/	Chr4	31805065	31805085	-	Y/N
osa-miR395e	miRbase		Chr4	31804922	31804942	-	Y/N
osa-miR395g	miRbase		Chr4	31804643	31804663	-	Y/N
osa-miR395h	miRbase		Chr8	3299225	3299245	+	Y/N
Osa-miR395i	miRbase/PmiREN	/	Chr8	3299387	3299407	+	Y/N
osa-miR395j	miRbase		Chr8	3299560	3299580	+	Y/N
Osa-miR395k	miRbase/PmiREN	/	Chr8	3299720	3299740	+	Y/N
osa-miR395l	miRbase		Chr8	3300070	3300090	+	Y/N
Osa-miR395s	miRbase/PmiREN	/	Chr4	32622998	32623018	+	Y/N
osa-miR395t	miRbase		Chr9	6607363	6607383	-	N/N
osa-miR395c	miRbase		Chr4	31805203	31805223	-	Y/N
osa-miR395a	miRbase		Chr4	31805504	31805524	-	Y/N
osa-miR395f	miRbase		Chr4	31804781	31804801	-	N/N
osa-miR395u	miRbase		Chr9	6606711	6606731	-	N/N
Osa-miR396a	miRbase/PmiREN	/	Chr2	34280394	34280414	+	Y/Y
osa-miR396a-3p	miRbase		Chr2	34280509	34280528	+	Y/Y
Osa-miR396b	miRbase/PmiREN	/	Chr6	3669659	3669679	+	Y/Y
osa-miR396b-3p	miRbase		Chr6	3669736	3669755	+	Y/Y
Osa-miR396c	miRbase/PmiREN	/	Chr2	34287983	34288003	-	Y/N
osa-miR396c-3p	miRbase		Chr2	34287881	34287901	-	Y/N
osa-miR397a	miRbase		Chr6	28489795	28489815	+	Y/Y
osa-miR397b	miRbase		Chr2	3280868	3280888	-	Y/Y
osa-miR398a	miRbase		Chr10	9216260	9216280	-	Y/N
osa-miR398b	miRbase		Chr7	14598627	14598647	-	Y/Y
Osa-miR399a	miRbase/PmiREN	/	Chr1	30478754	30478774	+	Y/Y
Osa-miR399b	miRbase/PmiREN	/	Chr2	7664036	7664056	-	Y/Y
Osa-miR399c	miRbase/PmiREN	/	Chr5	26305948	26305968	-	Y/Y
osa-miR399d	miRbase		Chr6	1562044	1562064	+	Y/N
Osa-miR399e	miRbase/PmiREN	/	Chr1	30477622	30477642	-	Y/N
Osa-miR399f	miRbase/PmiREN	/	Chr6	20888641	20888661	-	Y/N
Osa-miR399g	miRbase/PmiREN	/	Chr2	7675372	7675392	+	Y/N
Osa-miR399h	miRbase/PmiREN	/	Chr5	26308004	26308024	+	Y/N
Osa-miR399i	miRbase/PmiREN	/	Chr2	7650769	7650789	+	Y/N
osa-miR399j	miRbase		Chr4	28873196	28873216	+	Y/N
Osa-miR399k	miRbase/PmiREN	/	Chr5	26311328	26311348	+	Y/Y
osa-miR156k	miRbase		Chr9	18289182	18289202	-	N/N
Osa-miR156l	miRbase/PmiREN	/	Chr5	5230619	5230639	+	Y/Y
osa-miR156l-3p	miRbase		Chr5	5230735	5230756	+	Y/N
osa-miR159a.2	miRbase		Chr1	17682123	17682143	+	Y/N
osa-miR159a.1	miRbase		Chr1	17682164	17682184	+	Y/N
Osa-miR159b	miRbase/PmiREN	/	Chr1	1215187	1215207	+	Y/N
osa-miR159c	miRbase		Chr1	6556058	6556078	-	Y/Y
osa-miR159d	miRbase		Chr1	6563766	6563786	-	Y/Y
osa-miR159e	miRbase		Chr1	9760718	9760738	-	Y/Y
osa-miR159f	miRbase		Chr1	6693269	6693289	+	Y/N
osa-miR319a-5p	miRbase		Chr1	26823397	26823417	-	Y/N
osa-miR319a-3p	miRbase		Chr1	26823336	26823356	-	Y/N
osa-miR319a-3p.2-3p	miRbase		Chr1	26823292	26823311	-	Y/N
osa-miR319b	miRbase		Chr1	6677580	6677599	-	Y/N
Osa-miR160e	miRbase/PmiREN	/	Chr7	2216844	2216864	-	Y/N
osa-miR160e-3p	miRbase		Chr7	2216769	2216789	-	Y/N
Osa-miR160f	miRbase/PmiREN	/	Chr8	24396892	24396912	+	Y/N
osa-miR160f-3p	miRbase		Chr8	24396953	24396973	+	Y/N
Osa-miR162b	miRbase/PmiREN	/	Chr4	24406002	24406022	+	Y/N
Osa-miR164c	miRbase/PmiREN	/	Chr5	17327450	17327470	+	Y/N
osa-miR164d	miRbase		Chr2	33143630	33143650	-	Y/N
Osa-miR164e	miRbase/PmiREN	/	Chr3	10542167	10542187	+	Y/Y
osa-miR166k-5p	miRbase		Chr2	32435097	32435117	-	Y/N
Osa-miR166k	miRbase/PmiREN	/	Chr2	32435013	32435033	-	Y/N
osa-miR166l-5p	miRbase		Chr9	16951829	16951849	+	Y/N
Osa-miR166l	miRbase/PmiREN	/	Chr9	16951903	16951923	+	Y/N
osa-miR167d-5p	miRbase		Chr7	4166374	4166394	-	Y/N
osa-miR167d-3p	miRbase		Chr7	4166303	4166324	-	Y/Y
osa-miR167e-5p	miRbase		Chr2	3742483	3742503	-	Y/N
Osa-miR167e	miRbase/PmiREN	/	Chr2	3742249	3742269	-	Y/N
osa-miR167f	miRbase		Chr10	14723126	14723146	-	Y/N
osa-miR167g	miRbase		Chr3	3347692	3347712	+	Y/N
osa-miR167h-5p	miRbase		Chr12	25480628	25480648	+	Y/N
osa-miR167h-3p	miRbase		Chr12	25480709	25480729	+	Y/N
Osa-miR167i	miRbase/PmiREN	/	Chr6	27674759	27674779	+	Y/N
osa-miR167i-3p	miRbase		Chr6	27674921	27674941	+	Y/N
osa-miR168a-5p	miRbase		Chr2	1553210	1553230	-	Y/N
osa-miR168a-3p	miRbase		Chr2	1553162	1553185	-	Y/N
osa-miR168b	miRbase		Chr2	27336438	27336458	+	N/N
Osa-miR169b	miRbase/PmiREN	/	Chr6	27296005	27296025	-	Y/N
Osa-miR169c	miRbase/PmiREN	/	Chr4	30712419	30712439	-	Y/N
Osa-miR169d	miRbase/PmiREN	/	Chr9	14620454	14620474	-	N/N
Osa-miR169e	miRbase/PmiREN	/	Chr2	31205967	31205987	-	Y/N
osa-miR169f.2	miRbase		Chr2	18558482	18558502	-	Y/Y
osa-miR169f.1	miRbase		Chr2	18558461	18558481	-	Y/N
Osa-miR169g	miRbase/PmiREN	/	Chr4	19420087	19420107	+	Y/N
Osa-miR169h	miRbase/PmiREN	/	Chr8	26807359	26807379	+	Y/Y
osa-miR169i-5p.2	miRbase		Chr8	26803136	26803157	+	Y/Y
Osa-miR169i	miRbase/PmiREN	/	Chr8	26803159	26803179	+	Y/Y
osa-miR169i-3p	miRbase		Chr8	26803250	26803271	+	Y/N
Osa-miR169j	miRbase/PmiREN	/	Chr9	19788871	19788891	+	Y/Y
Osa-miR169k	miRbase/PmiREN	/	Chr9	19792143	19792163	+	Y/Y
Osa-miR169l	miRbase/PmiREN	/	Chr8	26817498	26817518	+	Y/Y
Osa-miR169m	miRbase/PmiREN	/	Chr8	26813907	26813927	+	Y/Y
Osa-miR169n	miRbase/PmiREN	/	Chr11	6085398	6085418	-	Y/Y
Osa-miR169o	miRbase/PmiREN	/	Chr11	6081670	6081690	-	Y/Y
osa-miR169p	miRbase		Chr8	7641421	7641442	-	Y/N
osa-miR169q	miRbase		Chr8	26817565	26817585	-	Y/N
Osa-miR171b	miRbase/PmiREN	/	Chr8	5369222	5369242	+	Y/N
osa-miR171c-5p	miRbase		Chr4	31713541	31713561	-	Y/N
Osa-miR171c	miRbase/PmiREN	/	Chr4	31713482	31713502	-	Y/N
osa-miR171d-5p	miRbase		Chr10	21237325	21237345	+	Y/Y
Osa-miR171d	miRbase/PmiREN	/	Chr10	21237417	21237437	+	Y/N
osa-miR171e-5p	miRbase		Chr3	1970499	1970519	+	Y/N
Osa-miR171e	miRbase/PmiREN	/	Chr3	1970575	1970595	+	Y/N
osa-miR171f-5p	miRbase		Chr3	30027786	30027806	+	Y/Y
Osa-miR171f	miRbase/PmiREN	/	Chr3	30027870	30027890	+	Y/N
osa-miR171g	miRbase		Chr7	15636754	15636774	-	Y/Y
Osa-miR172a	miRbase/PmiREN	/	Chr9	22881912	22881932	+	Y/N
osa-miR172b	miRbase		Chr1	42923746	42923766	-	Y/N
Osa-miR172c	miRbase/PmiREN	/	Chr7	13111495	13111515	-	N/N
osa-miR166g-5p	miRbase		Chr12	18329381	18329401	+	Y/N
Osa-miR166g	miRbase/PmiREN	/	Chr12	18329481	18329501	+	Y/N
osa-miR166h-5p	miRbase		Chr2	32435260	32435280	-	Y/Y
Osa-miR166h	miRbase/PmiREN	/	Chr2	32435184	32435204	-	Y/N
osa-miR166i-5p	miRbase		Chr3	25294967	25294987	+	N/N
osa-miR166i-3p	miRbase		Chr3	25295067	25295087	+	Y/N
osa-miR171h	miRbase		Chr4	28482509	28482529	+	Y/Y
osa-miR393b-5p	miRbase		Chr4	34931960	34931981	-	Y/Y
osa-miR393b-3p	miRbase		Chr4	34931885	34931905	-	Y/Y
osa-miR408-5p	miRbase		Chr1	12301691	12301711	+	Y/Y
Osa-miR408	miRbase/PmiREN	/	Chr1	12301813	12301833	+	Y/N
osa-miR172d-5p	miRbase		Chr2	35143626	35143645	-	Y/Y
Osa-miR172d	miRbase/PmiREN	/	Chr2	35143556	35143576	-	Y/N
osa-miR171i-5p	miRbase		Chr3	21191610	21191630	+	Y/N
osa-miR171i-3p	miRbase		Chr3	21191690	21191710	+	Y/N
osa-miR167j	miRbase		Chr1	32686182	32686202	-	Y/N
osa-miR166m	miRbase		Chr8	23045502	23045522	+	Y/Y
osa-miR166j-5p	miRbase		none	none	none	none	Y/N
osa-miR166j-3p	miRbase		none	none	none	none	Y/N
Osa-miR164f	miRbase/PmiREN	/	Chr5	23343931	23343951	+	Y/N
osa-miR413	miRbase		Chr12	10136385	10136405	+	N/N
osa-miR414	miRbase		Chr11	15504904	15504924	+	N/N
osa-miR415	miRbase		Chr12	26270580	26270600	-	N/N
osa-miR416	miRbase		Chr4	17456252	17456272	+	N/N
osa-miR417	miRbase		Chr8	14939896	14939916	+	N/N
osa-miR418	miRbase		Chr2	35182642	35182662	-	N/N
osa-miR419	miRbase		Chr12	8237586	8237606	-	N/N
osa-miR426	miRbase		Chr5	174012	174032	+	N/N
osa-miR435	miRbase		Chr3	18209546	18209565	+	Y/N
osa-miR437	miRbase		Chr2	17050374	17050394	-	N/N
osa-miR438	miRbase		Chr6	20745988	20746008	+	N/N
Osa-miR390	miRbase/PmiREN	/	Chr3	34275192	34275212	-	Y/N
osa-miR390-3p	miRbase		Chr3	34275156	34275175	-	Y/N
osa-miR439a	miRbase		Chr1	19880208	19880228	+	Y/N
osa-miR439b	miRbase		Chr10	5572957	5572977	+	Y/N
osa-miR439c	miRbase		Chr7	8233890	8233910	+	Y/N
osa-miR439d	miRbase		Chr3	13698381	13698401	+	Y/N
Osa-miR439e	miRbase/PmiREN	/	Chr10	15809263	15809285	-	N/N
osa-miR439f	miRbase		Chr9	16963092	16963112	+	Y/N
osa-miR439g	miRbase		Chr8	3664291	3664311	+	Y/N
osa-miR439h	miRbase		Chr6	1553126	1553146	-	Y/N
osa-miR439i	miRbase		none	none	none	none	N/N
Osa-miR440	miRbase/PmiREN	/	Chr11	9164827	9164850	-	Y/N
Osa-miR396e	miRbase/PmiREN	/	Chr4	34436832	34436852	+	Y/N
osa-miR396e-3p	miRbase		Chr4	34436971	34436994	+	Y/N
osa-miR443	miRbase		Chr3	30021486	30021507	+	N/N