Chr:
Chr3
Start:
34000704
End:
34000727
Strand:
+
Sequence:
CGAAGAAUCGCAGUCACUAGUUGU
Length:
24
precursor sequence:
CUCGAACUACUGCUAGUGAUGGUGAUUCUUCGACACAGUAUUCGGCGAGUUUUGGGCUUCAUCAUGCGGUGCUCGACAUGGUGACGAAGCCUGAACUUGCCAAAGACUGUCGAAGAAUCGCAGUCACUAGUUGUAAUUUGACUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
26
NEP:
9.49%
LE_num:
LEP:
22.99%
ME_num:
MEP:
65.33%
HE_num:
HEP:
2.19%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf_sheath
Tau :
0.75
Avg Expression:
5.26
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | 3.32688590835569 | 0.0138306341496419 |
| 2 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -2.53031991846838 | 0.0317792156868185 |
| 3 | none // leaves // WT, Control--/--none // leaves // DCL1a mutant, Control | -2.23250755801022 | 0.0189798948214791 |
| 4 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -1.49273911806756 | 0.0035262987982465 |
| 5 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -1.40636505435066 | 0.0239513794820465 |