Chr:
Chr11
Start:
9368076
End:
9368099
Strand:
-
Sequence:
ACCUGUGACGGGCCGAGAAUGGAA
Length:
24
precursor sequence:
CGGUUGCAGCCCGUCACAGGUAUCUAGUCACCUGUGACGGGCCGAGAAUGGAAUCCGUCAAAGGAACACACCUUUGUCAGAUUCUACUUCCUGCCCAUCACAGGUGACUAGAUACCUGUGACGGGCCGCAACUUAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
27
NEP:
9.85%
LE_num:
LEP:
6.57%
ME_num:
MEP:
62.41%
HE_num:
HEP:
21.17%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
ovary
Tau :
0.68
Avg Expression:
21.33
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_8h | -1.52670098203918 | 0.0181602118259572 |
| 2 | Nipponbare // leaf_sheath // S_bph feeding--/--BPH6-transgenic line // leaf_sheath // R_bph | -1.40157573633263 | 2.75006228603322e-05 |
| 3 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | -1.27026761863893 | 0.00139837382565061 |
| 4 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | 1.54403670051223 | 4.61678024601705e-05 |
| 5 | none // leaves // WT, Control--/--none // leaves // DCL1a mutant, Control | -1.95385175973269 | 0.0306698683931606 |
| 6 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -2.17800381090034 | 0.00161017626380503 |