Chr:
Chr11
Start:
16290598
End:
16290618
Strand:
-
Sequence:
UGACAACGAGAGAGAGCACGC
Length:
21
precursor sequence:
AUUUGCUCGCCGGCCGGCGGUGACAACGAGAGAGAGCACGCCGGUGCGGCGGUCACGGUGAGCCGGCCCGCGGCGGCGUACCUGCGUGCUUUCUCCCGUUGUCACUGCCAUACACACAUAUAUGCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
0
NEP:
0.0%
LE_num:
LEP:
0.36%
ME_num:
MEP:
18.61%
HE_num:
HEP:
81.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.89
Avg Expression:
2924.44
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(2) | 3.04459496943563 | 4.95784561644528e-13 |
| 2 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(1) | 3.95672752941792 | 1.62394065167991e-36 |
| 3 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | 2.43356317567331 | 3.13780560643705e-05 |
| 4 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | 3.07855079766904 | 5.29216952223079e-08 |
| 5 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | 4.00686242550968 | 3.56459979779464e-26 |
| 6 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | 3.42941033535673 | 2.94154118925619e-12 |
| 7 | glyphosate-tolerant variety // leaves // CK--/--glyphosate-tolerant variety // leaves // Glyphosate | 2.45065208800552 | 3.94478120753081e-05 |