Chr:
Chr5
Start:
18668414
End:
18668435
Strand:
+
Sequence:
CGAUCUUGAGGCAGGAACUGAG
Length:
22
precursor sequence:
GUCUUGCGUAUUCUUAGGCCCGAUCUUGAGGCAGGAACUGAGUAGUUGUUGAACUUGCUCUAUGUUGUUCGUUCACCCACUAUUCGGUUCCUGUCCCAAGAUCGAGUCUAUGAAUAUACAAAUGUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
129
NEP:
47.08%
LE_num:
LEP:
16.42%
ME_num:
MEP:
29.56%
HE_num:
HEP:
6.93%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf_sheath
Tau :
0.97
Avg Expression:
458.46
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | -6.03398860747442 | 0.000606131783631425 |
| 2 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_8h | -5.10266669673896 | 0.00439484132953932 |
| 3 | Nipponbare // leaf_sheath // S_bph feeding--/--BPH6-transgenic line // leaf_sheath // R_bph | 8.77293654948787 | 0 |
| 4 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | -4.24028697179316 | 1.82890301632955e-10 |
| 5 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | 1.78750852943395 | 4.3522408847725e-05 |
| 6 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | 8.51704413888794 | 0 |
| 7 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | -8.46975464549064 | 1.46690262128466e-260 |