RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

osa-miR1860-3p_miRbase

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr1

Start:

934456

End:

934477

Strand:

-

Sequence:

AUCUGGAAGCUAGGUUUUCUCU

Length:

22

precursor sequence:

UCUUGAUUUGAUGGUAGGGUUAGUGUUAUUUGUAAAGAGAAAACCAGCUUCCAGAUCUCGAAUUUGCCUCAAACUUAUCUUCUCUUGUAGAUCUGGAAGCUAGGUUUUCUCUUUACAAAUAACACUAUUUUUUCCCCCAUUAGGUCUG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

22

NEP:

8.03%

LE_num:

21

LEP:

7.66%

ME_num:

205

MEP:

74.82%

HE_num:

26

HEP:

9.49%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

flag_leaf

Tau :

0.86

Avg Expression:

23.12

Tip: osa-miR1860-3p_miRbase is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: osa-miR1860-3p_miRbase is not a differential expression ncRNA.