Chr:
Chr5
Start:
8862219
End:
8862239
Strand:
+
Sequence:
CAGCAAGAACUGGAUCUUAAU
Length:
21
precursor sequence:
CUGUUGACUGCAUUAGGAUUCAAUCCUUGCUGCUAAAUGUAUUGCUUAUAUUCAGCAAUAUAAUGUUCAGCAGCAAGAACUGGAUCUUAAUAUAGUCGAUAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
8
NEP:
2.92%
LE_num:
LEP:
4.01%
ME_num:
MEP:
76.28%
HE_num:
HEP:
16.79%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.89
Avg Expression:
95.84
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(2) | 2.38374525792705 | 0.000331058001473689 |
| 2 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(1) | 1.72592811334911 | 0.0102445409204175 |
| 3 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | 1.79951407222068 | 0.000819309809262713 |
| 4 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_8h | 1.5771052913235 | 0.00361030225390183 |
| 5 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h | 1.12644100722283 | 0.017140165968434 |
| 6 | Nipponbare // leaves // rice_mock--/--Nipponbare // leaves // rice_RSV | 2.09690519373547 | 3.55804662573228e-05 |