Chr:
Chr9
Start:
21044089
End:
21044112
Strand:
+
Sequence:
AGAUGACAUGUGAAUGAUGAGGGG
Length:
24
precursor sequence:
CGAGGGGACAUUCUCUCAUUGCUUGCAUGUCAUCCAAAUGUUUAUGAAAAAAUUAAAAAAAAUCAACUGGAUAGAUUAAUAUGUGAUAGAUAACUUCAUAAACAUGCAAGUUAAAAUUAAACUUCUACAAGUUGCAAAAAACUACAACUAAUCUAUCACAUAUUAAUCUAUUUUAUUAUUUUUUUAAAAAAAAUAUAACCAUUUAGAUGACAUGUGAAUGAUGAGGGGAUGUCCUCUAGAGCUUAGAAUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
229
NEP:
83.58%
LE_num:
LEP:
4.01%
ME_num:
MEP:
8.03%
HE_num:
HEP:
4.38%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
endosperm
Tau :
0.98
Avg Expression:
69.92
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -3.3574547909488 | 3.68920997905848e-12 |
| 2 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -5.25827924463406 | 2.01041573263999e-15 |