RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

osa-miR1861g_miRbase

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr5

Start:

18668633

End:

18668654

Strand:

+

Sequence:

CAGUCUUGUGGCAAGAACUGAG

Length:

22

precursor sequence:

CGGUGUUGCAUAUUCUUAGGCCCAGUCUUGUGGCAAGAACUGAGUAGUUCGUUAACUCGCUACGUGGUUCUUGUCACAAGAUCGAGCCUGUGAAUAUGCAAAGUUGG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

140

NEP:

51.09%

LE_num:

76

LEP:

27.74%

ME_num:

58

MEP:

21.17%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

seed

Tau :

0.81

Avg Expression:

1.94

Tip: osa-miR1861g_miRbase is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base-5.496508429359776.99828614380487e-06
2Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early-2.012273470541130.028884978960231
3BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_eaR_bphly-2.950504047930380.00167879271710564