Chr:
Chr3
Start:
23076951
End:
23076971
Strand:
+
Sequence:
UAAGAUAAUGCCAUGAAUUUG
Length:
21
precursor sequence:
AUAGGUUAGUGCGCUUGGCGAAUUCACAGGCCCUAUCUUGUGGUAUGAACUGGGUACGCGAUGAUUUGCACUGCGUAUUGGGGGCUUACCAUAAGAUAAUGCCAUGAAUUUGUCAAGCGUUCAAACCCACUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
49
NEP:
17.88%
LE_num:
LEP:
13.14%
ME_num:
MEP:
50.73%
HE_num:
HEP:
18.25%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.82
Avg Expression:
40.40
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 12h | -5.85144376762821 | 0.0499729170005184 |
| 2 | HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 24h | -6.27304121600959 | 0.00347184583668985 |
| 3 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | -1.31143242568383 | 0.0310501893956355 |
| 4 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_24h | 2.63836240481038 | 1.04373222280914e-05 |
| 5 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h | 2.22114824964211 | 0.00119709995740054 |
| 6 | Nipponbare // leaf_sheath // S_bph feeding--/--BPH6-transgenic line // leaf_sheath // R_bph | -1.22604792040314 | 0.0115002369873692 |
| 7 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | 1.33438493700858 | 7.8659133054138e-07 |
| 8 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | -1.3276249204576 | 0.0334159081655413 |
| 9 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | -1.40229060225714 | 0.0311686200681288 |
| 10 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | 1.74323602332959 | 0.000651109268632691 |
| 11 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | 1.82089050400167 | 1.35176337022444e-10 |