RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

osa-miR1880_miRbase

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr11

Start:

13959900

End:

13959923

Strand:

+

Sequence:

UUCCAAGCGGGCCACUUAAGCAUU

Length:

24

precursor sequence:

GUUCCGCUUGUGAAAAUCGAUUUUUCCAAGCGGGCCACUUAAGCAUUCCGCCUGUAAAAUUAAAGGUAUUUUCGCAGCCGGAUCGCUUAAGUGGUCCGCCUGGAUAAAUCGAUUUUCGUAGGCGGAUGA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

46

NEP:

16.79%

LE_num:

35

LEP:

12.77%

ME_num:

193

MEP:

70.44%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

leaf_sheath

Tau :

0.76

Avg Expression:

3.21

Tip: osa-miR1880_miRbase is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h-2.824297109798571.79149125449822e-05
2IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_8h-1.980938050604780.000239564841734354