RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

osa-miR1432-3p_miRbase

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr7

Start:

23401707

End:

23401727

Strand:

-

Sequence:

CAGGUGUCAUCUCCCCUGAAC

Length:

21

precursor sequence:

CCUGUGAUCAGGAGAGAUGACACCGACAUCGCCGGAAUUCGUUCUUGGUCUUGUGCCAUGAUGAAUUGAUGGUCCGUUUGAUGCAGGUGUCAUCUCCCCUGAACAUAGG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

98

NEP:

35.77%

LE_num:

50

LEP:

18.25%

ME_num:

116

MEP:

42.34%

HE_num:

10

HEP:

3.65%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

root

Tau :

0.93

Avg Expression:

23.12

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_eaR_bphly1.03386053963610.00536984271289597
2none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA4.468529301949030.0333738540380252