RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

osa-miR2092-5p_miRbase

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr12

Start:

10116332

End:

10116352

Strand:

+

Sequence:

CAACUGAAGUCGGUGUUUACU

Length:

21

precursor sequence:

UUGAUCUCCCAACUGAAGUCGGUGUUUACUCCCACAAGAUGAUACACUACUAGUCCACCCUUAUCAAUUGUAGUACACACCAGCAUUCCAUUGGCAGAGGUGU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

250

NEP:

91.24%

LE_num:

9

LEP:

3.28%

ME_num:

15

MEP:

5.47%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

seed

Tau :

0.97

Avg Expression:

0.87

Tip: osa-miR2092-5p_miRbase is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA2.956165483570220.0428610019866906