Chr:
Chr9
Start:
13536656
End:
13536676
Strand:
+
Sequence:
GAGAGGAGGACGGAGUGGGGC
Length:
21
precursor sequence:
UCCCGUCAUCGCUGCCGGCAAAGGGAGGGGGGGUGCCGCAACAAGGAGAGGAGGACGGAGUGGGGCGAGUGGAGCGUCAAAGGGGAUGUCAUCGCCGCCGAAUCUGCUCGUGGGACAUCCCCUUCGAUGCUCCACUCGCCCCAAUCCGUCCUCCUCUCCUUGUUGCGGCACCCCCCUUCGCUGGCAGCGACGACGGCCUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
242
NEP:
88.32%
LE_num:
LEP:
4.38%
ME_num:
MEP:
5.47%
HE_num:
HEP:
1.82%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seed
Tau :
0.93
Avg Expression:
6.14
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -5.76501973935528 | 0.000833218310422647 |