Chr:
Chr3
Start:
1667395
End:
1667415
Strand:
+
Sequence:
CCUGUGCUUGCCUCUUCCAUU
Length:
21
precursor sequence:
AGUGGAAGGGGCAUGCAGAGGAGCAGGAGAUUCAGUUUGAAGCUGGACUUCACUUUUGCCUCUCUCUCCUGUGCUUGCCUCUUCCAUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
20
NEP:
7.3%
LE_num:
LEP:
10.95%
ME_num:
MEP:
59.12%
HE_num:
HEP:
22.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.88
Avg Expression:
97.51
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 12h | -4.20407763414944 | 0.00394095452731502 |
| 2 | HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 24h | -4.56346584967384 | 2.52556884407473e-06 |
| 3 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | 1.3204224433185 | 0.0240939683729367 |
| 4 | glyphosate-tolerant variety // leaves // CK--/--glyphosate-tolerant variety // leaves // Glyphosate | 1.65701133487034 | 0.0165961073582165 |
| 5 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -1.89700674930952 | 0.00285139328488541 |
| 6 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | -1.65569139601279 | 0.031508493292016 |