Chr:
Chr2
Start:
32435013
End:
32435033
Strand:
-
Sequence:
UCGGACCAGGCUUCAAUCCCU
Length:
21
precursor sequence:
UUGCUUGGAUUAGGUUAAGGGGUUUGUUGUCUGGCUCGAGGCAUCCGGGACUCCGGUUUCUCCUUUCCUACUGGAGGCGCCUAAUUUCCGGCGAGCUCGGAGCCUCGGACCAGGCUUCAAUCCCUUUAACCAUGCGGCAUAUUGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
0
NEP:
0.0%
LE_num:
LEP:
0.36%
ME_num:
MEP:
4.01%
HE_num:
HEP:
95.62%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.78
Avg Expression:
2684.72
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 24h | 1.57792672874276 | 0.0244708430397532 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | 1.05791855306062 | 1.19466918185982e-08 |
| 3 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | 1.00459775923924 | 2.78600603324336e-08 |
| 4 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | 1.44821813664669 | 1.47524977627603e-41 |
| 5 | glyphosate-tolerant variety // leaves // CK--/--glyphosate-tolerant variety // leaves // Glyphosate | -1.3255423699123 | 0.0101307906614354 |
| 6 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -1.22365744238774 | 1.29407857100699e-38 |
| 7 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | -1.18178513935948 | 0.00392676384671443 |