Chr:
none
Start:
none
End:
none
Strand:
none
Sequence:
GAAUGACGUCCGGUCUGAAGA
Length:
21
precursor sequence:
UGAUCCAUGGCUGUUGAGAGGAAUGACGUCCGGUCUGAAGAUCGCCGUCCCCAGGCGGUGGCUUCGGACCAGGCUUCAUUCCCCAUGACUCAUGGAACCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
24
NEP:
8.76%
LE_num:
LEP:
12.41%
ME_num:
MEP:
50.36%
HE_num:
HEP:
28.47%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.86
Avg Expression:
89.72
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(2) | 1.88783941490929 | 6.20277186988229e-24 |
| 2 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(1) | 1.48223734010681 | 6.50085103040488e-20 |
| 3 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | 2.07836407914819 | 3.33687705277212e-21 |
| 4 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | 2.58053575217184 | 2.54353801200718e-17 |
| 5 | PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17 | 1.74732900292688 | 8.30059964348602e-15 |
| 6 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | -1.85326977713756 | 6.47673178644115e-07 |
| 7 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | -1.72925105566713 | 7.06885476118645e-08 |
| 8 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | -1.18510997596542 | 2.23039458885481e-05 |