Chr:
Chr7
Start:
2216769
End:
2216789
Strand:
-
Sequence:
GCGUGCGAGGUGCCAAGCAUG
Length:
21
precursor sequence:
GUAGGGGAUAUGCCUGGCUCCCUGUAUGCCGCUCGCAUGGCUGCCAACCCAAUGAACUCGAUCUCGUUGUUGGCCGCUGCGUACGGCGUGCGAGGUGCCAAGCAUGGCCCUCUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
145
NEP:
52.92%
LE_num:
LEP:
22.99%
ME_num:
MEP:
22.99%
HE_num:
HEP:
1.09%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.84
Avg Expression:
4.35
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf_sheath // S_bph feeding--/--BPH6-transgenic line // leaf_sheath // R_bph | -4.06116728676797 | 2.50957569546546e-25 |
| 2 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | -7.56949679483338 | 6.86110221586432e-09 |
| 3 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | -5.02002258588517 | 6.56339404504599e-15 |
| 4 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | 2.03620266944964 | 0.00225438160213263 |