RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miR399h_Both

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr5

Start:

26308004

End:

26308024

Strand:

+

Sequence:

UGCCAAAGGAGACUUGCCCAG

Length:

21

precursor sequence:

UAUGGGGCCCAUGCAUUACUGGGCAGGUCUCCCUUGGCAGUGGCCGAUCGAGCUGAUCAAACCACGCAAAAGCCACUGCCAAAGGAGACUUGCCCAGCAAUGCAGAUUUGAGGCCAC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

216

NEP:

78.83%

LE_num:

46

LEP:

16.79%

ME_num:

12

MEP:

4.38%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

seedling

Tau :

0.93

Avg Expression:

0.51

Tip: Osa-miR399h_Both is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1)-8.91287452514529.61824755122022e-08
2PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2)-8.975685371796181.77859400747449e-07