RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

osa-miR166i-3p_miRbase

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr3

Start:

25295067

End:

25295087

Strand:

+

Sequence:

UCGGAUCAGGCUUCAUUCCUC

Length:

21

precursor sequence:

AGAUAGGUGUUUGGAAUGCAGUUUGAUCCAAGAUCUGCCUAUAUAUAUGGUGUGUAUAUCAUAUCUUGUGAUAUGGGGGAUAUGCAACAGGUGUGUGACAGGGGUAGGUAGAUCUCGGAUCAGGCUUCAUUCCUCACACCAAUAC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

0

NEP:

0.0%

LE_num:

0

LEP:

0.0%

ME_num:

95

MEP:

34.67%

HE_num:

179

HEP:

65.33%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

panicle

Tau :

0.80

Avg Expression:

456.24

Tip: osa-miR166i-3p_miRbase is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1glyphosate-tolerant variety // leaves // CK--/--glyphosate-tolerant variety // leaves // Glyphosate-1.290012035019890.0356095374193275
2PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17-2.601827369754266.62928268434899e-130
3IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h-1.356401176759160.00259784791327681
4none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA2.016439463968163.94542571732091e-09
5none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA1.165635015351680.00447545894542336