Chr:
Chr2
Start:
34287983
End:
34288003
Strand:
-
Sequence:
UUCCACAGCUUUCUUGAACUU
Length:
21
precursor sequence:
UUCAAGUCCAUGCCAUGCCUUUCCACAGCUUUCUUGAACUUCUCUUGUGCCUCACUCACUUUCAUUACUGGAGAGAUAUGCAUCAUCAGUGGAAGCUUAUAGGGAGAGGAGUGCAAGAAGAGGGUCAAGAAAGCUGUGGGAAGAAAUGGCAUUACAAGGACUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
0
NEP:
0.0%
LE_num:
LEP:
1.09%
ME_num:
MEP:
9.49%
HE_num:
HEP:
89.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.84
Avg Expression:
1440.76
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | 1.26522418005251 | 2.19080892086925e-11 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | 1.72525389460479 | 6.03039504201954e-20 |
| 3 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | -1.60482070852744 | 6.97134652215747e-05 |
| 4 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -1.20074151004228 | 2.59642417323887e-30 |
| 5 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | -1.43583247181685 | 0.0332870345271317 |