| SRR4098209 | leaf | No treatment | 706.81 | HC |
| SRR3130369 | leaf | control 8 hour | 42.16 | HC |
| SRR3130368 | leaf | 8 hpi;M.oryzae | 41.37 | HC |
| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 328.95 | HC |
| SRR3140955 | leaf | "45C, 12h" | 26.38 | HC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 532.88 | HC |
| SRR5049778 | anther | floret length/mm: 2.6-2.8 | 33.20 | HC |
| SRR8258050 | leaf_sheath | R_bph | 481.29 | HC |
| SRR5120079 | leaf_sheath | PC_0 | 1825.79 | HC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 397.73 | HC |
| SRR8258059 | leaf_sheath | R_bph_late | 180.75 | HC |
| SRR8258058 | leaf_sheath | R_bph_late | 228.99 | HC |
| SRR10690152 | leaf | IRBB5_0h | 562.26 | HC |
| SRR6810106 | panicle | panicle | 34.70 | HC |
| SRR7058097 | leaf | rice_mock | 10361.56 | HC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 102.19 | HC |
| SRR7058098 | leaf | rice_RSV | 5040.66 | HC |
| SRR10690150 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 692.62 | HC |
| SRR3234043 | pollen | floret length/mm: 2.50-3.00 | 38.44 | HC |
| SRR2154076 | seedling | Guangluai4_seedling | 212.76 | HC |
| SRR2154077 | seedling | KDM105_seedling | 247.36 | HC |
| SRR10690151 | leaf | IRBB5_0h | 431.44 | HC |
| SRR4098204 | seedling | Drought (air-dried) | 124.54 | HC |
| SRR10690156 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 878.23 | HC |
| SRR1061625 | panicle | Heat Stress | 80.08 | HC |
| SRR1061624 | panicle | Normal | 487.47 | HC |
| SRR1612403 | leaf | WT wild type (miRNA) | 77.63 | HC |
| SRR1061622 | flag_leaf | Normal | 122.22 | HC |
| SRR1061621 | flag_leaf | Heat Stress | 350.62 | HC |
| SRR1061620 | flag_leaf | Normal | 323.89 | HC |
| SRR10690154 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 606.84 | HC |
| SRR10704058 | leaf | Glyphosate | 66.76 | HC |
| SRR10690155 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 622.13 | HC |
| SRR3234042 | pollen | floret length/mm: 5.50-6.00 | 98.38 | HC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 42.10 | HC |
| SRR1013785 | flag_leaf | LYP9_FL | 442.59 | HC |
| SRR1013784 | flag_leaf | PA64s_FL | 204.53 | HC |
| SRR1013787 | panicle | PA64s_PA | 123.40 | HC |
| SRR1013786 | flag_leaf | 93-11_FL | 221.97 | HC |
| SRR1013789 | panicle | 93-11_PA | 17.87 | HC |
| SRR1013788 | panicle | LYP9_PA | 33.43 | HC |
| SRR9070101 | shoot_base | WT_base | 71.41 | HC |
| SRR426799 | leaf | mock-treated susceptible rice line | 227.61 | HC |
| SRR6810105 | panicle | panicle | 24.08 | HC |
| SRR089619 | panicle | control | 450.63 | HC |
| SRR447135 | shoot | As(III) 20 uM | 27.02 | HC |
| SRR447133 | shoot | As(III) 20 uM | 31.14 | HC |
| SRR1849765 | leaf | Control 30min | 68.49 | HC |
| SRR1849767 | leaf | Control 30min | 173.18 | HC |
| SRR1849768 | leaf | Margaporthe oryzae 30min | 19.10 | HC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 173.76 | HC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 21.59 | HC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 1712.41 | HC |
| SRR6498701 | leaf | "WT, Control" | 1216.99 | HC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 1859.89 | HC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 3919.77 | HC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 328.66 | HC |
| SRR3203907 | leaf | WT | 35.53 | HC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 1039.02 | HC |
| SRR12416749 | blade | sRNA_Blade_S5 | 328.23 | HC |
| SRR12416748 | blade | sRNA_Blade_S5 | 187.50 | HC |
| SRR12416741 | blade | sRNA_Blade_S1 | 119.85 | HC |
| SRR12416740 | blade | sRNA_Blade_S1 | 122.02 | HC |
| SRR12416743 | blade | sRNA_Blade_S2 | 73.28 | HC |
| SRR12416742 | blade | sRNA_Blade_S2 | 135.24 | HC |
| SRR12416745 | blade | sRNA_Blade_S3 | 269.06 | HC |
| SRR12416744 | blade | sRNA_Blade_S3 | 213.44 | HC |
| SRR12416747 | blade | sRNA_Blade_S4 | 134.88 | HC |
| SRR12416746 | blade | sRNA_Blade_S4 | 455.26 | HC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 1690.43 | HC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 31.57 | HC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 16.53 | HC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 23.88 | HC |
| SRR1849776 | leaf | Margaporthe oryzae 120min | 38.90 | HC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 116.30 | HC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 109.67 | HC |
| SRR1849773 | leaf | Control 120min | 130.64 | HC |
| SRR1849772 | leaf | Control 120min | 141.66 | HC |
| SRR1849771 | leaf | Control 120min | 114.11 | HC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 152.94 | HC |
| SRR3130372 | leaf | 24 hpi;M.oryzae | 71.50 | HC |
| SRR3130373 | leaf | 48 hpi;M.oryzae | 26.06 | HC |
| SRR3130370 | leaf | control 8 hour | 50.23 | HC |
| SRR3130371 | leaf | 24 hpi;M.oryzae | 58.62 | HC |
| SRR3130374 | leaf | 48 hpi;M.oryzae | 30.14 | HC |
| SRR7058096 | leaf | rice_mock | 10419.30 | HC |
| SRR1742988 | endosperm | 4X_En_sRNA | 7.70 | HC |
| SRR1742989 | endosperm | 4X_En_sRNA | 7.37 | HC |
| SRR2154081 | seedling | Taipei309_seedling | 272.67 | HC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 191.24 | HC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 210.82 | HC |
| SRR5120084 | leaf_sheath | P15_48 | 854.58 | HC |
| SRR6365689 | seedling | Wild type | 39.90 | HC |
| SRR447136 | shoot | As(III) 80 uM | 17.68 | HC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 10.15 | HC |
| SRR5120083 | leaf_sheath | P15_6 | 2561.16 | HC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 122.90 | HC |
| SRR10704060 | leaf | Glyphosate | 76.66 | HC |
| SRR5120082 | leaf_sheath | P15_0 | 1895.52 | HC |
| SRR5049779 | anther | floret length/mm: 3.8-4.0 | 49.49 | HC |
| SRR3140952 | leaf | "45C, 0h" | 86.54 | HC |
| SRR976171 | lamina_joint | wild type | 2355.52 | HC |
| SRR4098208 | root | No treatment | 19.18 | HC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 160.71 | HC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 13.80 | HC |
| SRR9070100 | shoot_base | WT_base | 83.25 | HC |
| SRR4098205 | seedling | Heat (50C) | 265.05 | HC |
| SRR6810104 | flag_leaf | flag_leaf | 952.51 | HC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 175.33 | HC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 14.41 | HC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 29.13 | HC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 356.32 | HC |
| SRR3130365 | leaf | control 0 hour | 80.17 | HC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 223.15 | HC |
| SRR3130367 | leaf | 8 hpi;M.oryzae | 34.94 | HC |
| SRR3130366 | leaf | control 0 hour | 55.52 | HC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 12.59 | HC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 11.17 | HC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 8.22 | HC |
| SRR1742993 | endosperm | 2X4_En_sRNA | 12.57 | HC |
| SRR1742992 | endosperm | 2X4_En_sRNA | 3.95 | HC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 4.60 | HC |
| SRR1742990 | endosperm | 4X_En_sRNA | 13.44 | HC |
| SRR2862364 | leaf | mock leaf cells | 39.90 | HC |
| SRR2862365 | leaf | mock leaf cells | 24.34 | HC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 68.94 | HC |
| SRR2862367 | leaf | viruliferous Infected leaf cells | 35.03 | HC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 467.61 | HC |
| SRR2862363 | leaf | mock leaf cells | 74.10 | HC |
| SRR8649147 | panicle | panicle tissue | 248.15 | HC |
| SRR4098207 | panicle | No treatment | 341.01 | HC |
| SRR10704055 | leaf | CK | 56.91 | HC |
| SRR10704057 | leaf | CK | 129.58 | HC |
| SRR10704056 | leaf | CK | 60.66 | HC |
| SRR10704059 | leaf | Glyphosate | 14.18 | HC |
| SRR1061623 | flag_leaf | Heat Stress | 237.56 | HC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 117.06 | HC |
| SRR9070102 | shoot_base | WT_base | 47.08 | HC |
| SRR6498699 | leaf | "WT, Control" | 908.10 | HC |
| SRR2154078 | seedling | Rathuwee_seedling | 126.25 | HC |
| SRR2154079 | seedling | Heukgyeong_seedling | 236.30 | HC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 12.31 | HC |
| SRR10690145 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 648.24 | HC |
| SRR10690144 | leaf | IR24_0h | 2290.45 | HC |
| SRR10690147 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 817.91 | HC |
| SRR10690146 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 656.87 | HC |
| SRR10690143 | leaf | IR24_0h | 885.50 | HC |
| SRR10690142 | leaf | IR24_0h | 993.42 | HC |
| SRR2646852 | panicle | FP | 14.96 | HC |
| SRR2646853 | panicle | FP | 15.95 | HC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 116.39 | HC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 31.82 | HC |
| SRR10690149 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 432.79 | HC |
| SRR10690148 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 540.61 | HC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 209.31 | HC |
| SRR3234045 | pollen | floret length/mm: 5.50-6.00 | 59.55 | HC |
| SRR5049784 | anther | floret length/mm: 6.0-6.5 | 55.62 | HC |
| SRR5049785 | anther | floret length/mm: >7.0 | 117.25 | HC |
| SRR4098203 | seedling | No treatment | 156.32 | HC |
| SRR5049783 | anther | floret length/mm: 4.3-4.5 | 20.88 | HC |
| SRR5049780 | anther | floret length/mm: 5.0-5.5 | 84.38 | HC |
| SRR3234044 | pollen | floret length/mm: 3.80-4.30 | 53.61 | HC |
| SRR6365690 | seedling | Wild type | 38.03 | HC |
| SRR5049782 | anther | floret length/mm: 3.1-3.3 | 22.64 | HC |
| SRR6365692 | panicle | Wild type | 113.80 | HC |
| SRR6365693 | panicle | Wild type | 155.84 | HC |
| SRR6365694 | panicle | Wild type | 150.07 | HC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 29.53 | HC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 294.61 | HC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 235.44 | HC |
| SRR6810101 | seedling | seedling | 1333.49 | HC |
| SRR8258068 | leaf_sheath | S_bph feeding_early | 163.00 | HC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 209.08 | HC |
| SRR3234041 | pollen | floret length/mm: 3.80-4.30 | 56.59 | HC |
| SRR5049781 | anther | floret length/mm: >6.5 | 73.69 | HC |
| SRR8258063 | leaf_sheath | S_bph feeding | 319.89 | HC |
| SRR8258060 | leaf_sheath | R_bph_late | 263.53 | HC |
| SRR12416738 | lamina_joint | sRNA_LJ_S5 | 19.23 | HC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 158.68 | HC |
| SRR10690158 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 734.33 | HC |
| SRR10690159 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 833.72 | HC |
| SRR6365691 | panicle | Wild type | 124.19 | HC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 6.57 | HC |
| SRR10690153 | leaf | IRBB5_0h | 390.94 | HC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 18.93 | HC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 42.27 | HC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 133.20 | HC |
| SRR10690157 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 493.08 | HC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 109.50 | HC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 64.43 | HC |
| SRR3110556 | shoot | shoot control | 3768.45 | HC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 61.12 | HC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 139.30 | HC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 192.14 | HC |
| SRR1061616 | panicle | Normal | 104.20 | HC |
| SRR1061617 | panicle | Heat Stress | 618.48 | HC |
| SRR1061614 | panicle | Normal | 154.67 | HC |
| SRR1061615 | panicle | Heat Stress | 1173.01 | HC |
| SRR1061612 | panicle | Normal | 259.49 | HC |
| SRR1061613 | panicle | Heat Stress | 397.88 | HC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 195.94 | HC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 12.47 | HC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 1010.00 | HC |
| SRR6810103 | flag_leaf | flag_leaf | 778.01 | HC |
| SRR1061618 | flag_leaf | Normal | 350.65 | HC |
| SRR1061619 | flag_leaf | Heat Stress | 138.42 | HC |
| SRR9937395 | spikelet | sRNA basal spikelets | 285.94 | HC |
| SRR9937394 | spikelet | sRNA apical spikelets | 490.81 | HC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 16.49 | HC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 141.62 | HC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 163.07 | HC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 196.72 | HC |
| SRR2544788 | embryo | 24 hours imbibition | 81.10 | HC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 11.77 | HC |
| SRR3140954 | leaf | "45C, 12h" | 283.44 | HC |
| SRR089621 | panicle | cold | 2164.15 | HC |
| SRR089620 | panicle | drought | 981.85 | HC |
| SRR3140957 | leaf | "45C, 24h" | 833.95 | HC |
| SRR089622 | panicle | salt | 469.93 | HC |
| SRR2544787 | embryo | 12 hours imbibition | 29.62 | HC |
| SRR2544786 | embryo | dry seed | 20.50 | HC |
| SRR4098172 | seedling | Cold (4C) | 232.95 | HC |
| SRR3140956 | leaf | "45C, 24h" | 205.11 | HC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 27.17 | HC |
| SRR3140953 | leaf | "45C, 0h" | 65.89 | HC |
| SRR6810102 | seedling | seedling | 1926.17 | HC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 178.69 | HC |
| SRR10956502 | panicle | WT | 417.37 | HC |
| SRR2862368 | leaf | viruliferous Infected leaf cells | 37.52 | HC |
| SRR10956501 | panicle | WT | 424.90 | HC |
| SRR8258065 | leaf_sheath | S_bph feeding | 403.61 | HC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 216.26 | HC |
| SRR8258048 | leaf_sheath | R_bph | 691.71 | HC |
| SRR2154080 | seedling | Nipponbare_seedling | 98.49 | HC |
| SRR5120081 | leaf_sheath | PC_48 | 1079.80 | HC |
| SRR5120080 | leaf_sheath | PC_6 | 1476.52 | HC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 9.37 | HC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 28.66 | HC |
| SRR8258061 | leaf_sheath | S_bph feeding | 397.99 | HC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 219.91 | HC |
| SRR3110557 | shoot | shoot treated | 3481.86 | HC |
| SRR5940086 | panicle | Wild type | 298.89 | HC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 6.36 | HC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 9.22 | HC |
| SRR8258051 | leaf_sheath | R_bph | 582.30 | HC |