Chr:
Chr3
Start:
765831
End:
765851
Strand:
+
Sequence:
UCGAACCAGGCUUCAUUCCCC
Length:
21
precursor sequence:
UGUUUCUGGGUGGAAUGUUGUCUGGUUCAAGGCCCCUUAGGAUGUGUGAUUUUUGAUGGUUUAUGCAUUCAUCUUGAUGCGAACAUCUAUCUCGGAUCUUUGGGUUCUCGAACCAGGCUUCAUUCCCCUCAGAGAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
5
NEP:
1.82%
LE_num:
LEP:
5.47%
ME_num:
MEP:
77.74%
HE_num:
HEP:
14.96%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
ovary
Tau :
0.86
Avg Expression:
35.08
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -2.58706235862763 | 0.0249708736532156 |
| 2 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_24h | -2.13084101190877 | 0.0268920964068403 |
| 3 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h | -2.15219521751054 | 0.0115487997024996 |
| 4 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | 2.14049867076252 | 6.12217486289043e-06 |
| 5 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_eaR_bphly | 1.81466459261554 | 0.000467989211763024 |
| 6 | none // leaves // WT, Control--/--none // leaves // DCL1a mutant, Control | 1.79039362368539 | 0.0468529928407226 |
| 7 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | 2.48985404488612 | 0.000874316885233787 |