Chr:
Chr5
Start:
5230735
End:
5230756
Strand:
+
Sequence:
GCUCACUUCUCUUUCUGUCAGC
Length:
22
precursor sequence:
GCUAGGGAGCCGACAGAAGAGAGUGAGCAUAUAUAGUUCUUUCCUUGCAUAUGUGGUCAUAUGUGUGUUGACUGAAGAGAUACAUAUAUAUAGAGAGAGAGAGUUCAUGUGCUUGAAGCUAUAUGUGCUCACUUCUCUUUCUGUCAGCAAAUUAUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
53
NEP:
19.34%
LE_num:
LEP:
11.31%
ME_num:
MEP:
49.27%
HE_num:
HEP:
20.07%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
lamina_joint
Tau :
0.86
Avg Expression:
144.58
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(2) | 8.12438188610178 | 2.44990761082657e-06 |
| 2 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(1) | 7.52137990878389 | 1.68625320333256e-05 |
| 3 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | 7.16689260360233 | 2.93067657705249e-05 |
| 4 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | 8.04151133033273 | 1.89471045794481e-06 |
| 5 | glyphosate-tolerant variety // leaves // CK--/--glyphosate-tolerant variety // leaves // Glyphosate | 2.4037148082858 | 1.68596937337353e-05 |
| 6 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | 2.69446453062742 | 8.19010593377098e-05 |