Chr:
Chr1
Start:
17682164
End:
17682184
Strand:
+
Sequence:
UUUGGAUUGAAGGGAGCUCUG
Length:
21
precursor sequence:
GUUGUGGACGUUGAGCUCCUUUCGGUCCAAAAAGGGGUGUUGCUGUGGGUCGAUUGAGCUGCUGGGUCAUGGAUCCCGUUAGCCUACUCCAUGUUCAUCAUUCAGCUCGAGAUCUGAAAGAAACUACUCCAAUUUAUACUAAUAGUAUGUGUGUAGAUAGGAAAAUGAUGGAGUACUCGUUGUUGGGAUAGGCUUAUGGCUUGCAUGCCCCAGGAGCUGCAUCAACCCUACAUGGACCCUCUUUGGAUUGAAGGGAGCUCUGCAUCUUUUGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
0
NEP:
0.0%
LE_num:
0
LEP:
0.0%
ME_num:
0
MEP:
0.0%
HE_num:
274
HEP:
100.0%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf_sheath
Tau :
0.87
Avg Expression:
31205.06
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 24h | -1.63426586543797 | 0.0248349300566054 |
| 2 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | 1.01207234760332 | 8.40549355949797e-26 |
| 3 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | 1.07878021193481 | 7.41299872268346e-06 |
| 4 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -2.13561922468286 | 1.01564871983365e-13 |
| 5 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | 1.14290130296697 | 3.58092692671792e-11 |
| 6 | none // leaves // WT, Control--/--none // leaves // DCL1a mutant, Control | -1.843372231273 | 0.0143234833385483 |
| 7 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | 3.02316525644085 | 3.86353174563037e-21 |