Chr:
Chr1
Start:
12301813
End:
12301833
Strand:
+
Sequence:
CUGCACUGCCUCUUCCCUGGC
Length:
21
precursor sequence:
UGAUUGGAGAGGAGAGGAGACAGGGAUGAGGCAGAGCAUGGGAUGGGGCUAUCAACAGAUGUAGAUUAUUCCUUGCACAAGAGAUGAUGAUGAGCUGUGAAUGAGUUCUGAGAGAUGGCUGGUGUUGUUGUUGCUCCCUCCCCUGCACUGCCUCUUCCCUGGCUCCCCUGCACACCUCUCUCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
2
NEP:
0.73%
LE_num:
LEP:
0.73%
ME_num:
MEP:
39.05%
HE_num:
HEP:
59.49%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.78
Avg Expression:
1166.51
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 24h | -1.98563417970097 | 0.011991850663516 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | 2.17870668537698 | 0.00610270632972974 |
| 3 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | 3.97595420121317 | 3.97080963214455e-10 |
| 4 | PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17 | -1.18535295132193 | 0.000586571895991676 |
| 5 | glyphosate-tolerant variety // leaves // CK--/--glyphosate-tolerant variety // leaves // Glyphosate | 2.44597559141659 | 6.7890666862293e-06 |
| 6 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_24h | -2.04921165435638 | 4.99587337639289e-06 |
| 7 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h | -1.72973699503943 | 0.0388243237269362 |