Chr:
Chr1
Start:
17682123
End:
17682143
Strand:
+
Sequence:
UUGCAUGCCCCAGGAGCUGCA
Length:
21
precursor sequence:
GUUGUGGACGUUGAGCUCCUUUCGGUCCAAAAAGGGGUGUUGCUGUGGGUCGAUUGAGCUGCUGGGUCAUGGAUCCCGUUAGCCUACUCCAUGUUCAUCAUUCAGCUCGAGAUCUGAAAGAAACUACUCCAAUUUAUACUAAUAGUAUGUGUGUAGAUAGGAAAAUGAUGGAGUACUCGUUGUUGGGAUAGGCUUAUGGCUUGCAUGCCCCAGGAGCUGCAUCAACCCUACAUGGACCCUCUUUGGAUUGAAGGGAGCUCUGCAUCUUUUGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
3
NEP:
1.09%
LE_num:
LEP:
3.28%
ME_num:
MEP:
54.74%
HE_num:
HEP:
40.88%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.79
Avg Expression:
111.22
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | 1.81212981603005 | 0.0137359939312335 |
| 2 | Nipponbare // leaves // rice_mock--/--Nipponbare // leaves // rice_RSV | 2.21716782526442 | 6.49363673390263e-06 |