Chr:
Chr12
Start:
25480709
End:
25480729
Strand:
+
Sequence:
AGGUCAUGCUGUAGUUUCAUC
Length:
21
precursor sequence:
CACAAGUUGGUGAAGCUGCCAGCAUGAUCUGAUGAUGAUGAUGAUCCACCUCUCUCAUCUGUGUUCUUGAUUAAUUACGGAUCAAUCGAUCAGGUCAUGCUGUAGUUUCAUCUGCUGGUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
3
NEP:
1.09%
LE_num:
LEP:
2.92%
ME_num:
MEP:
58.76%
HE_num:
HEP:
37.23%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.74
Avg Expression:
52.00
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -1.86717979042921 | 6.92360336839255e-09 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -1.19107082951392 | 0.000717631300335976 |
| 3 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | 1.14472314819235 | 0.0128516768180795 |
| 4 | C101LAC // leaves // control 0 hour--/--C101LAC // leaves // 8 hpi;M.oryzae | -3.98580001137346 | 0.0190020454419937 |
| 5 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | -1.07331036483982 | 0.00139388909575898 |
| 6 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | -1.30944132182916 | 8.26219048282197e-05 |
| 7 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | -1.61148325768299 | 4.05042099605633e-07 |
| 8 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -2.6988495840194 | 0.00208597152528357 |