Chr:
Chr1
Start:
6677580
End:
6677599
Strand:
-
Sequence:
UUGGACUGAAGGGUGCUCCC
Length:
20
precursor sequence:
GAUGGAUGGAAGAGAGCGUCCUUCAGUCCACUCAUGGGCGGUGCUAGGGUCGAAUUAGCUGCCGACUCAUUCACCCACAUGCCAAGCAAGAAACGCUUGAGAUAGCGAAGCUUAGCAGAUGAGUGAAUGAAGCGGGAGGUAACGUUCCGAUCUCGCGCCGUCUUUGCUUGGACUGAAGGGUGCUCCCUCCUCCUCGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
7
NEP:
2.55%
LE_num:
LEP:
2.19%
ME_num:
MEP:
37.59%
HE_num:
HEP:
57.66%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.89
Avg Expression:
2831.72
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(2) | 1.14712988247602 | 6.25504871229541e-40 |
| 2 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | 1.47037230748078 | 1.98160719677511e-51 |
| 3 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | 1.34534203580698 | 7.78539668918873e-07 |
| 4 | glyphosate-tolerant variety // leaves // CK--/--glyphosate-tolerant variety // leaves // Glyphosate | -2.00316365183151 | 0.00128563737645011 |
| 5 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h | -1.21708156392447 | 0.031063980051226 |
| 6 | Nipponbare // leaf_sheath // S_bph feeding--/--BPH6-transgenic line // leaf_sheath // R_bph | -3.02451246130622 | 1.35158706540871e-68 |
| 7 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | -2.25639754004653 | 9.52048236862359e-36 |
| 8 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | -3.36116095228631 | 3.88214478916131e-81 |
| 9 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | 2.110755419787 | 2.43378525489455e-16 |
| 10 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_eaR_bphly | 1.1932740806896 | 0.000426460635976986 |
| 11 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | 1.14158859208552 | 0.000668919644277011 |