RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

osa-miR171i-5p_miRbase

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr3

Start:

21191610

End:

21191630

Strand:

+

Sequence:

AGGUAUUGGCGUGCCUCAAUC

Length:

21

precursor sequence:

UAAAAAGAGGUAUUGGCGUGCCUCAAUCCGAAGGCAUGGCUGAUUACAGGCACCUCGACCGAUCUAGCGCAUGCAGCCAUGUUUCUUGGAUUGAGCCGCGUCAAUAUCUCUCCUUGCUUC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

78

NEP:

28.47%

LE_num:

75

LEP:

27.37%

ME_num:

104

MEP:

37.96%

HE_num:

17

HEP:

6.2%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

pollen

Tau :

0.87

Avg Expression:

14.87

Tip: osa-miR171i-5p_miRbase is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h-2.338969168494882.8283916740943e-08
2IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_8h-1.84307599909821.06542254790996e-05