RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

Fliter by Chromosome:

Fliter by DE/TSE:

total numbers: 1299

rows per page

Name	Database	Chromosome	Start	End	Strand	DE/TSE
Osa-miR5151	PmiREN	Chr5	3661607	3661627	-	Y/N
Osa-miR1130	PmiREN	Chr3	24748148	24748167	+	N/N
Osa-miRN2331	PmiREN	Chr9	9324615	9324635	+	N/Y
Osa-miRN2267d	PmiREN	Chr6	11137339	11137359	+	N/Y
Osa-miRN2308	PmiREN	Chr9	8761068	8761088	+	N/Y
Osa-miR820a	PmiREN	Chr1	14130483	14130504	+	Y/N
Osa-miRN2267a	PmiREN	Chr10	11705913	11705933	+	N/Y
Osa-miR820c	PmiREN	Chr10	6928685	6928708	+	Y/N
Osa-miR820b	PmiREN	Chr7	13120702	13120725	-	Y/N
Osa-miRN2302	PmiREN	Chr5	8249359	8249379	+	N/Y
Osa-miRN2301	PmiREN	Chr1	11883749	11883769	-	N/Y
Osa-miRN2300	PmiREN	Chr1	34289922	34289942	+	Y/Y
Osa-miRN2307	PmiREN	Chr8	17084861	17084881	+	N/Y
Osa-miRN2306	PmiREN	Chr8	1202343	1202363	+	N/Y
Osa-miRN2305	PmiREN	Chr7	6722807	6722827	-	N/Y
Osa-miRN2304	PmiREN	Chr6	24723463	24723483	-	Y/Y
Osa-miRN2328	PmiREN	Chr6	9669276	9669296	-	Y/Y
Osa-miR1850	PmiREN	Chr5	26275302	26275322	-	Y/N
Osa-miR5512	PmiREN	Chr4	18386989	18387009	-	Y/N
Osa-miRN45b	PmiREN	Chr9	11946580	11946599	-	Y/N
Osa-miRN2283c	PmiREN	Chr11	3821417	3821437	+	Y/N
Osa-miRN2288	PmiREN	Chr2	1523682	1523702	+	N/Y
Osa-miRN45a	PmiREN	Chr4	23654557	23654576	+	Y/N
Osa-miRN2283d	PmiREN	Chr12	26412030	26412050	+	N/N
Osa-miRN2283e	PmiREN	Chr4	24388669	24388689	-	Y/N
Osa-miRN2282	PmiREN	Chr11	959655	959675	+	Y/N
Osa-miR11336	PmiREN	Chr1	35090303	35090323	-	Y/N
Osa-miRN2286	PmiREN	Chr11	16646688	16646708	-	N/Y
Osa-miRN2287	PmiREN	Chr11	9449683	9449703	+	N/Y
Osa-miRN2284	PmiREN	Chr1	22934987	22935007	-	Y/N
Osa-miRN2289	PmiREN	Chr8	18629272	18629292	-	Y/Y
Osa-miR319a	PmiREN	Chr1	26823291	26823311	-	Y/N
Osa-miR319b	PmiREN	Chr1	6677579	6677599	-	Y/N
Osa-miR5801b	PmiREN	Chr10	2141363	2141382	-	Y/N
Osa-miR5801c	PmiREN	Chr1	5168626	5168645	-	Y/N
Osa-miR5801f	PmiREN	Chr11	20541522	20541542	+	N/N
Osa-miR5801g	PmiREN	Chr1	17742512	17742532	-	Y/N
Osa-miRN1879	PmiREN	Chr7	26333238	26333257	+	Y/Y
Osa-miRN2279	PmiREN	Chr12	26345196	26345216	-	Y/N
Osa-miR5801o	PmiREN	Chr6	5898601	5898621	-	Y/N
Osa-miRN2195b	PmiREN	Chr3	26422902	26422922	-	N/N
Osa-miRN2195c	PmiREN	Chr3	7617391	7617411	-	N/N
Osa-miR2863a	PmiREN	Chr2	29869574	29869597	+	Y/Y
Osa-miR2873d	PmiREN	Chr2	18373566	18373586	-	N/N
Osa-miR2873e	PmiREN	Chr3	32963518	32963538	-	N/N
Osa-miR2873f	PmiREN	Chr7	21640013	21640034	+	Y/N
Osa-miR2873c	PmiREN	Chr7	27503531	27503553	+	N/N
Osa-miRN2372	PmiREN	Chr11	24569670	24569690	-	N/Y
Osa-miR395q	PmiREN	Chr4	32622716	32622736	+	Y/N
Osa-miRN2370	PmiREN	Chr10	11863830	11863850	+	N/Y
Osa-miR5795a	PmiREN	Chr9	11103946	11103967	-	Y/N
Osa-miRN2376	PmiREN	Chr5	13976622	13976642	+	N/Y
Osa-miRN2377	PmiREN	Chr6	28293791	28293811	+	N/Y
Osa-miRN2374	PmiREN	Chr3	26834061	26834081	+	N/N
Osa-miRN2375	PmiREN	Chr4	17474475	17474495	-	N/N
Osa-miR814	PmiREN	Chr11	6537593	6537612	+	Y/N
Osa-miR5795d	PmiREN	Chr7	7703345	7703366	+	Y/N
Osa-miR11339f	PmiREN	Chr9	7974442	7974462	-	N/N
Osa-miR11339g	PmiREN	Chr9	7233194	7233214	-	N/N
Osa-miR11339d	PmiREN	Chr6	9408438	9408458	-	N/N
Osa-miR11339e	PmiREN	Chr6	6835136	6835156	+	N/N
Osa-miR11339b	PmiREN	Chr6	30763690	30763710	-	N/N
Osa-miR11339c	PmiREN	Chr6	21843016	21843036	-	N/N
Osa-miR11339a	PmiREN	Chr8	10041686	10041706	+	Y/N
Osa-miR11339n	PmiREN	Chr9	8881628	8881648	-	N/N
Osa-miR11339o	PmiREN	Chr9	915192	915212	-	N/N
Osa-miR11339l	PmiREN	Chr1	29242336	29242356	+	N/N
Osa-miR11339m	PmiREN	Chr8	26541373	26541393	+	N/N
Osa-miR5337b	PmiREN	Chr3	35885492	35885511	-	N/N
Osa-miR11339k	PmiREN	Chr5	176940	176963	+	N/N
Osa-miR11339h	PmiREN	Chr4	27611219	27611238	+	Y/N
Osa-miR11339v	PmiREN	Chr2	6014598	6014619	-	N/N
Osa-miR11339w	PmiREN	Chr3	11400500	11400521	-	N/N
Osa-miR11339t	PmiREN	Chr5	22998595	22998615	+	Y/N
Osa-miR11339u	PmiREN	Chr11	25244496	25244516	+	Y/N
Osa-miR11339r	PmiREN	Chr6	28992325	28992345	+	Y/N
Osa-miR11339s	PmiREN	Chr7	19380588	19380608	+	Y/N
Osa-miR11339p	PmiREN	Chr1	11324633	11324656	-	N/N
Osa-miR11339q	PmiREN	Chr12	16041754	16041774	-	Y/N
Osa-miR11339z	PmiREN	Chr6	8084212	8084233	+	N/N
Osa-miR11339x	PmiREN	Chr6	14421356	14421377	-	N/N
Osa-miR11339y	PmiREN	Chr6	12344123	12344144	-	N/N
Osa-miR439c	PmiREN	Chr1	18021796	18021817	+	Y/N
Osa-miR439b	PmiREN	Chr10	5572955	5572978	+	Y/N
Osa-miR439a	PmiREN	Chr7	8233877	8233900	+	N/N
Osa-miR439g	PmiREN	Chr8	3664278	3664301	+	N/N
Osa-miR439f	PmiREN	Chr9	16963079	16963102	+	N/N
Osa-miR439d	PmiREN	Chr6	1553137	1553160	-	N/N
Osa-miR5160	PmiREN	Chr7	23952866	23952889	-	Y/N
Osa-miR1862f	PmiREN	Chr3	29954038	29954057	+	N/Y
Osa-miR1862a	PmiREN	Chr5	1928707	1928726	+	Y/Y
Osa-miRN2273	PmiREN	Chr3	32487508	32487528	+	Y/Y
Osa-miRN2272	PmiREN	Chr12	22069226	22069246	-	N/Y
Osa-miRN2271	PmiREN	Chr4	18477956	18477977	+	Y/N
Osa-miRN2270	PmiREN	Chr10	10862757	10862776	+	Y/N
Osa-miRN2277	PmiREN	Chr9	6620328	6620348	+	N/N
Osa-miR1862h	PmiREN	Chr10	3413461	3413482	-	Y/N
Osa-miRN2275	PmiREN	Chr4	17660213	17660233	+	Y/Y
Osa-miRN2274	PmiREN	Chr6	9588773	9588793	+	N/Y
Osa-miR11339aa	PmiREN	Chr7	21696587	21696608	-	N/N
Osa-miR11339ab	PmiREN	Chr8	23267654	23267675	+	N/N
Osa-miR11339ac	PmiREN	Chr10	1429973	1429993	+	N/N
Osa-miR11339ae	PmiREN	Chr2	19576181	19576201	+	N/N
Osa-miR11339af	PmiREN	Chr3	5460796	5460816	+	N/N
Osa-miR1883	PmiREN	Chr11	13523542	13523565	+	Y/N
Osa-miR11339ah	PmiREN	Chr1	10371867	10371892	+	N/N
Osa-miR1441	PmiREN	Chr12	19485783	19485808	-	Y/N
Osa-miR5485	PmiREN	Chr3	22088085	22088105	-	Y/N
Osa-miR812an	PmiREN	Chr1	15765333	15765354	+	Y/N
Osa-miRN2164b	PmiREN	Chr1	34779342	34779362	+	Y/N
Osa-miRN2164c	PmiREN	Chr1	9049212	9049232	+	Y/N
Osa-miRN2164f	PmiREN	Chr7	27813203	27813223	+	Y/N
Osa-miRN2164g	PmiREN	Chr9	1319732	1319752	+	Y/N
Osa-miR812ao	PmiREN	Chr5	5651689	5651710	+	Y/N
Osa-miRN2232g	PmiREN	Chr12	18328189	18328209	+	Y/N
Osa-miR395r	PmiREN	Chr4	32622858	32622879	+	Y/N
Osa-miR5788e	PmiREN	Chr3	4209193	4209213	+	Y/N
Osa-miRN2323c	PmiREN	Chr9	15088792	15088812	-	N/Y
Osa-miRN2323b	PmiREN	Chr7	16779471	16779491	-	N/Y
Osa-miRN2323a	PmiREN	Chr3	23448549	23448569	+	N/Y
Osa-miR395t	PmiREN	Chr9	6607390	6607412	-	N/N
Osa-miR2106	PmiREN	Chr2	23768618	23768641	-	Y/N
Osa-miR5819b	PmiREN	Chr1	38527800	38527820	+	N/N
Osa-miR11337g	PmiREN	Chr1	25287023	25287043	+	Y/N
Osa-miRN2371	PmiREN	Chr11	25080569	25080589	-	Y/Y
Osa-miRN2280	PmiREN	Chr1	33588810	33588830	+	Y/N
Osa-miR171h	PmiREN	Chr4	28482510	28482530	+	Y/Y
Osa-miR5795b	PmiREN	Chr10	6427387	6427408	-	Y/N
Osa-miR171a	PmiREN	Chr6	25891201	25891221	+	Y/N
Osa-miR171g	PmiREN	Chr7	15636749	15636770	-	Y/Y
Osa-miR1861k	PmiREN	Chr9	13532666	13532686	+	Y/N
Osa-miR1861d	PmiREN	Chr4	6536355	6536375	+	Y/N
Osa-miR1861e	PmiREN	Chr8	15132585	15132605	-	Y/N
Osa-miR1861g	PmiREN	Chr12	16586413	16586433	-	Y/Y
Osa-miR1861a	PmiREN	Chr4	6536571	6536591	+	Y/N
Osa-miR1861c	PmiREN	Chr2	20716240	20716262	+	Y/N
Osa-miR168	PmiREN	Chr2	1553210	1553230	-	Y/N
Osa-miR5788a	PmiREN	Chr3	30006963	30006983	+	Y/N
Osa-miR5788b	PmiREN	Chr1	38985769	38985789	-	N/N
Osa-miR5788c	PmiREN	Chr2	27384263	27384283	-	Y/N
Osa-miR5788d	PmiREN	Chr2	15572963	15572983	-	Y/N
Osa-miR5788f	PmiREN	Chr9	11842898	11842918	+	Y/N
Osa-miR11342a	PmiREN	Chr11	23289399	23289420	-	Y/N
Osa-miR11342b	PmiREN	Chr4	23201075	23201095	+	N/N
Osa-miR812af	PmiREN	Chr3	1453547	1453570	-	Y/N
Osa-miR812ag	PmiREN	Chr1	23374135	23374156	-	Y/N
Osa-miR812ad	PmiREN	Chr6	30201985	30202008	-	Y/Y
Osa-miR812ae	PmiREN	Chr3	17638738	17638761	+	Y/Y
Osa-miR812ab	PmiREN	Chr8	18137891	18137912	+	Y/N
Osa-miR812ac	PmiREN	Chr3	16194432	16194455	-	Y/N
Osa-miR166c	PmiREN	Chr3	3487877	3487897	+	Y/N
Osa-miR166m	PmiREN	Chr8	23045502	23045521	+	Y/Y
Osa-miR812al	PmiREN	Chr6	27596226	27596249	-	Y/N
Osa-miR812aa	PmiREN	Chr7	27140878	27140899	-	Y/N
Osa-miR812ak	PmiREN	Chr8	2687961	2687984	+	Y/N
Osa-miR166j	PmiREN	Chr3	30392799	30392819	-	Y/N
Osa-miR396f	PmiREN	Chr2	35636692	35636712	-	Y/N
Osa-miRN2333	PmiREN	Chr10	14035811	14035831	+	N/N
Osa-miRN2338	PmiREN	Chr12	22033257	22033277	+	N/Y
Osa-miRN2339	PmiREN	Chr12	24831791	24831811	+	N/Y
Osa-miR812am	PmiREN	Chr6	21245498	21245521	-	Y/Y
Osa-miR812aj	PmiREN	Chr2	27756493	27756516	+	Y/N
Osa-miR166i	PmiREN	Chr3	25295065	25295085	+	Y/N
Osa-miRN2295	PmiREN	Chr12	24290567	24290587	+	N/Y
Osa-miRN2297	PmiREN	Chr12	21727741	21727761	-	N/Y
Osa-miRN2296	PmiREN	Chr12	24862194	24862214	+	Y/Y
Osa-miR5152a	PmiREN	Chr5	28910228	28910248	-	N/N
Osa-miR812ah	PmiREN	Chr3	35561723	35561746	-	Y/Y
Osa-miRN2293	PmiREN	Chr4	18680363	18680382	-	N/Y
Osa-miR5152b	PmiREN	Chr5	29148351	29148371	+	N/N
Osa-miR482	PmiREN	Chr4	21654404	21654425	-	Y/Y
Osa-miR812ai	PmiREN	Chr12	24677388	24677411	+	Y/N
Osa-miRN2299	PmiREN	Chr12	21011265	21011285	-	N/Y
Osa-miRN2336	PmiREN	Chr12	16207990	16208010	+	N/Y
Osa-miRN2334	PmiREN	Chr10	3705965	3705985	+	N/N
Osa-miR812ar	PmiREN	Chr10	19333224	19333243	+	Y/N
Osa-miRN2173	PmiREN	Chr7	16257970	16257990	+	N/N
Osa-miR531e	PmiREN	Chr5	8564911	8564932	-	Y/N
Osa-miR812ap	PmiREN	Chr7	16750018	16750039	-	Y/N
Osa-miR812aq	PmiREN	Chr1	27167165	27167186	+	Y/N
Osa-miR1430	PmiREN	Chr12	6825111	6825133	-	Y/N
Osa-miR1432	PmiREN	Chr7	23401783	23401804	-	Y/Y
Osa-miR5837	PmiREN	Chr11	24702182	24702202	-	N/N
Osa-miRN2260b	PmiREN	Chr6	27970697	27970717	-	N/Y
Osa-miR5831	PmiREN	Chr5	28577938	28577960	+	Y/N
Osa-miR5809b	PmiREN	Chr4	23527612	23527633	-	N/N
Osa-miR5537a	PmiREN	Chr10	11112761	11112782	+	N/N
Osa-miR5537b	PmiREN	Chr11	19389088	19389109	+	N/N
Osa-miR5537c	PmiREN	Chr6	3109261	3109282	-	N/N
Osa-miRN2276b	PmiREN	Chr2	23015418	23015438	-	Y/N
Osa-miRN2276c	PmiREN	Chr4	34592807	34592827	-	Y/N
Osa-miRN2276a	PmiREN	Chr11	149510	149530	-	Y/N
Osa-miRN2285b	PmiREN	Chr10	3019375	3019394	-	Y/Y
Osa-miR11339j	PmiREN	Chr3	11025951	11025972	-	N/N
Osa-miRN2285c	PmiREN	Chr11	21857897	21857916	+	Y/Y
Osa-miR11339i	PmiREN	Chr12	22138563	22138586	+	N/N
Osa-miR821	PmiREN	Chr8	19925167	19925189	-	N/N
Osa-miR530	PmiREN	Chr4	8303664	8303684	-	Y/Y
Osa-miRN2237a	PmiREN	Chr4	9137284	9137303	-	Y/N
Osa-miRN2237c	PmiREN	Chr8	22325694	22325715	+	Y/N