Chr:
Chr7
Start:
23401783
End:
23401804
Strand:
-
Sequence:
AUCAGGAGAGAUGACACCGACA
Length:
22
precursor sequence:
UGGGGGGUUUGGGCCCUGUGAUCAGGAGAGAUGACACCGACAUCGCCGGAAUUCGUUCUUGGUCUUGUGCCAUGAUGAAUUGAUGGUCCGUUUGAUGCAGGUGUCAUCUCCCCUGAACAUAGGACUGACUGACCCUGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
16
NEP:
5.84%
LE_num:
LEP:
3.28%
ME_num:
MEP:
24.45%
HE_num:
HEP:
66.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.94
Avg Expression:
1644.46
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(2) | 1.44537597303496 | 0.0149836795773903 |
| 2 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(1) | 1.62579066499678 | 0.000224795687148233 |
| 3 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | 2.44359964753336 | 1.19466918185982e-08 |
| 4 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | 1.63363553537508 | 0.00174176792527659 |
| 5 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | 2.1336270504673 | 1.02901681964275e-05 |
| 6 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | 1.61119091598196 | 0.0102436898279216 |
| 7 | glyphosate-tolerant variety // leaves // CK--/--glyphosate-tolerant variety // leaves // Glyphosate | 3.32368270084802 | 3.87848998808068e-17 |
| 8 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -2.5146756342004 | 0.00125304242930261 |
| 9 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | 2.15952625809397 | 1.91880619547633e-05 |
| 10 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_8h | 1.31718271779192 | 0.0445785759144833 |
| 11 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | 1.02612802473727 | 1.4065424638405e-10 |
| 12 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | 1.61984171624788 | 3.73314520518481e-23 |
| 13 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | 2.6551995206678 | 8.8442824536318e-07 |
| 14 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | 6.66613597239243 | 4.60569138241533e-40 |