Chr:
Chr7
Start:
13120702
End:
13120725
Strand:
-
Sequence:
UCGGCCUCGUGGAUGGACCAGGAG
Length:
24
precursor sequence:
ACCUCUGACUUGUACAUGCGUCGGCCUCGUGGAUGGACCAGGAGCUCGACGUUCCUUAAGGCCGUUCUUUCCGACCCAUACAAGGUUCCGUCGCCUGCAUUGUUCCAAGAGUGUCUUGGACGAAAGCAGGAAGUGGAACCUUGUUAAGGUCGGAACGAACUGCCUUAAGGAAGUCGAUGCUUUAGGUCCGUCCACGAGGACGACGCAGCUAGGAGUUAGAGGUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
3
NEP:
1.09%
LE_num:
LEP:
0.36%
ME_num:
MEP:
9.49%
HE_num:
HEP:
89.05%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.80
Avg Expression:
786.97
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -1.52086621848428 | 1.84184197979634e-06 |
2 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -1.05408046155286 | 0.00208597152528357 |