Chr:
Chr12
Start:
6825111
End:
6825133
Strand:
-
Sequence:
UAGCCAAGAAUGGCUUGCCUAUC
Length:
23
precursor sequence:
GAUGAGGAGAUUGCCUCUGUUAGCCAAGAAUGGCUUGCCUAUCUCCACUAUUUGGUUCAUCACUGGAACACACUUGGGGUUCUCAGAUGGUGGAUGAAAUAUGGAAGAUGGUGAGCCUUCCUGGCUAAGAGAGUGAUUCUCAUCCCCCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
53
NEP:
19.34%
LE_num:
LEP:
22.63%
ME_num:
MEP:
53.65%
HE_num:
HEP:
4.38%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.91
Avg Expression:
9.97
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | 2.04112684726552 | 0.00149784855210992 |
| 2 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_8h | 1.43367594689029 | 0.0461537501602758 |
| 3 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h | 2.00312413983706 | 0.0156397003633337 |
| 4 | Nipponbare // leaf_sheath // S_bph feeding--/--BPH6-transgenic line // leaf_sheath // R_bph | 1.56028052101251 | 0.0237845711675583 |
| 5 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | 2.69168633547681 | 7.5275042022432e-06 |
| 6 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | 2.24310712319762 | 0.000281488590293017 |