Chr:
Chr10
Start:
10862757
End:
10862776
Strand:
+
Sequence:
UUAAACUCGGCUCAAUCUUU
Length:
20
precursor sequence:
UUUCUUCUAAUUGAUUGCAAUUAAACUCGGCUCAAUCUUUUUUCAGAUUGAGCCGAGUUUAAAUAGAUUUUGAUACGAUCAUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
39
NEP:
14.23%
LE_num:
LEP:
10.95%
ME_num:
MEP:
56.2%
HE_num:
HEP:
18.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.85
Avg Expression:
96.83
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 12h | -2.59669027336005 | 0.0130560653968678 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -6.48469947135801 | 9.77791688658012e-273 |
| 3 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -6.69340400343014 | 3.3793978961072e-251 |
| 4 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | -6.31419135682623 | 2.29855078122722e-17 |
| 5 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | -4.54925011103626 | 2.06444369704699e-10 |
| 6 | glyphosate-tolerant variety // leaves // CK--/--glyphosate-tolerant variety // leaves // Glyphosate | 1.84761661344985 | 0.00128563737645011 |
| 7 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | 5.56772644299992 | 4.4172502715893e-65 |
| 8 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_eaR_bphly | 1.62202681373906 | 0.00170326715772387 |