RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miR5788c_PmiREN

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

27384263

End:

27384283

Strand:

-

Sequence:

ACUAGGAUAUGUCACAUCCAG

Length:

21

precursor sequence:

AAAUAAACGAAUGUAGAAUUAGAUGUGACAUAUUCUGGUAUAAUGAAUCUGGACAGAGGUAUGUCCAGAUUCGUAAUACUAGGAUAUGUCACAUCCAGUACUAGGUUGAUUUUUUUUU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

79

NEP:

28.83%

LE_num:

55

LEP:

20.07%

ME_num:

140

MEP:

51.09%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

spikelet

Tau :

0.85

Avg Expression:

6.55

Tip: Osa-miR5788c_PmiREN is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late-1.055669443401410.0425567153417194