Chr:
Chr3
Start:
16194432
End:
16194455
Strand:
-
Sequence:
ACGAACGGUCAAAGUUGGGCGCGG
Length:
24
precursor sequence:
AAGUGCAGCCAUAAGUUUCCGCGCCCAAUUUUAAUCGUCCGUCUUAUUUAAAUUUUUUUUAUAAUUAGCAUUUUUGUUGUUAUGAGAUGAUAAAAUAUGAAUAGUAUUUUACUCAUAACUUAUGUUUUUAAAUUUUUCAAAAAAUUUUCAAAUAAAACGAACGGUCAAAGUUGGGCGCGGAAAACCAUGACUGCACUUAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
8
NEP:
2.92%
LE_num:
LEP:
3.65%
ME_num:
MEP:
87.59%
HE_num:
HEP:
5.84%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_base
Tau :
0.76
Avg Expression:
13.25
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | -1.12800018543574 | 0.0142798977707926 |
| 2 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h | -1.04617124150325 | 0.0156397003633337 |
| 3 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | 1.38156851109764 | 0.0166968684646446 |