Chr:
Chr7
Start:
27813203
End:
27813223
Strand:
+
Sequence:
UUCAUCUAGUAUGAGGACGUG
Length:
21
precursor sequence:
UGAUAUGACGACGUUGUUGUUUCAUCUAGUAUGAGGACGUGGCAUCAUAUUAAUUUCGUGCGAUGGCUGGUAAUAGGAUGCCAUGUCCUCGUCCUAGGUGAAACAGCCACAUCAUCUCGCGGGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
26
NEP:
9.49%
LE_num:
LEP:
11.31%
ME_num:
MEP:
73.72%
HE_num:
HEP:
5.47%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_base
Tau :
0.82
Avg Expression:
16.93
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | none // leaves // WT, Control--/--none // leaves // DCL1a mutant, Control | 3.57261909294544 | 0.0316131712949105 |