Chr:
Chr1
Start:
23374135
End:
23374156
Strand:
-
Sequence:
ACGCCCAACUUUGAUCGUCCGU
Length:
22
precursor sequence:
AGUUGCAACCAUAAGUUUUCACGCCCAACUUUGAUCGUCCGUCUUAUUUGAAUUUUUUAUAAUUAGUAUUUUUGUUGUUAUGAGAUGAUAAAACAUGAAUAGUACUUUACUCAUGACUAAUGUUUUUAAUUUUUUUAAAAAAAAUUGUCAAAUAAGAUAGACGGUCAAAAUUAGGUGCGAAAAACUAUGGCUGCAUUUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
28
NEP:
10.22%
LE_num:
LEP:
21.17%
ME_num:
MEP:
67.52%
HE_num:
HEP:
1.09%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.74
Avg Expression:
3.69
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | -1.58792100252403 | 0.000188942400569418 |
| 2 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_8h | -1.07797776049159 | 0.0237619071202592 |
| 3 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_24h | -1.23749621398249 | 0.000414999264272125 |
| 4 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h | -1.50574472035203 | 0.000338926989797417 |
| 5 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | -3.15032472701377 | 1.51918772222762e-14 |