RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miR1441_PmiREN

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr12

Start:

19485783

End:

19485808

Strand:

-

Sequence:

UUUUGGGUGUCACAUCGGACGUUU

Length:

24

precursor sequence:

UCCUUUUGAUAUCUGGUCAAACAUUCGAUGUGACAUCUAAAAAUUUUCUUUUCGCGAACUAAGGGCCUGUUUAGUUCGCGAAAAGAAAAUUUUUGGGUGUCACAUCGGACGUUUAACCGGAUGUCGGAAAAGGU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

122

NEP:

44.53%

LE_num:

103

LEP:

37.59%

ME_num:

49

MEP:

17.88%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

leaf_sheath

Tau :

0.79

Avg Expression:

0.71

Tip: Osa-miR1441_PmiREN is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base-5.148539010787850.00294006370843973