Chr:
Chr12
Start:
18328189
End:
18328209
Strand:
+
Sequence:
CAAAUCGUUUCUGAUCGUUGG
Length:
21
precursor sequence:
GUACCGGCACCUCAUGGUAACAAAUCGUUUCUGAUCGUUGGAUCUAACAAUGCCCAUCCUGCUAAGUUAGAUCCAACGAUCGGAAACGAUUUGGUACCGUGAGGUACCGGUACCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
70
NEP:
25.55%
LE_num:
LEP:
24.09%
ME_num:
MEP:
49.27%
HE_num:
HEP:
1.09%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_base
Tau :
0.93
Avg Expression:
5.99
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | -3.15596618407618 | 2.93567059860604e-21 |
2 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | 5.19525532332711 | 0.0156025382461133 |