RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miR2873f_PmiREN

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr7

Start:

21640013

End:

21640034

Strand:

+

Sequence:

UUGGACUUGAGAUUUGGUGAGA

Length:

22

precursor sequence:

UGUGGUUAUGAAAUACAUUAUUGCCAAAUAUCAAGUUUAAACUCAACUUUAUUUUGGGUAACAAAUAAGACAAAUUUUGGGUGAAUAGUAAUAUGCUACUAUUCACCUGAAAUUUGUCAUUUUUAUUUCUCUCAAAUAAAGUUGAGUUUGGACUUGAGAUUUGGUGAGAAUGUAUUUCACAUCUAUACC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

84

NEP:

30.66%

LE_num:

99

LEP:

36.13%

ME_num:

91

MEP:

33.21%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

leaf

Tau :

0.87

Avg Expression:

2.62

Tip: Osa-miR2873f_PmiREN is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late6.124229329832280.000432670561322912