Chr:
Chr7
Start:
7703345
End:
7703366
Strand:
+
Sequence:
AUGUCGAGGUCGAGUUCCCGGC
Length:
22
precursor sequence:
UGUUCCUUAGGCGGAGCAAACGGGAUCUCGACCUCGACAUCCAUAUCGCACAAGAACUUGCUACCGUUGCCACUAUCUUAUGGUAGUGACAUUGAUAGCAAGUUCGAGUGGGAUAUUGAUGUCGAGGUCGAGUUCCCGGCUGCUCCGGCCGUAAUGAACA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
167
NEP:
60.95%
LE_num:
LEP:
9.85%
ME_num:
MEP:
21.17%
HE_num:
HEP:
8.03%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.81
Avg Expression:
16.18
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | 1.19630954206074 | 0.0167281726061888 |
| 2 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_eaR_bphly | 1.27177866814854 | 0.029745392042431 |