RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miR5831_PmiREN

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr5

Start:

28577938

End:

28577960

Strand:

+

Sequence:

AUAAAAUUAGUCAAACUUAGA

Length:

21

precursor sequence:

UGGUCAAAUUUAAACUACUCUAAGUUUAACUAAUUUUAUAAAAAGAUAGUAAUAUUUUAAAUAAAUUUUCAUAAUAUAUUUAUUUUGGGUUAAAAAUAUUACUACUUUUUUCUAUAAAAUUAGUCAAACUUAGAAUAGUUGGACUUUAACUAAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

148

NEP:

54.01%

LE_num:

79

LEP:

28.83%

ME_num:

47

MEP:

17.15%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

ovary

Tau :

0.82

Avg Expression:

0.62

Tip: Osa-miR5831_PmiREN is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base-3.329597239845560.0450100260689624